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Streamed Events (8060) Software (1312) Computing Tools and Services (174) Professional Services (145) Organizations (118) Live Events (110) Data Resources (70) Guides (6)

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Lynda.com (7970) urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131 (340) urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561 (133) Technology Services (65) University Library (65) National Center for Supercomputing Applications (NCSA) (43) Research Park (41) XSEDE (XSEDE) (37) Engineering IT (31) Illinois State Geological Survey (ISGS) (24)

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uiuc.edu (8608) xsede.org (755) sciencegateways.org (632)

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Viewing: 1 - 25 of 9995 Click on a title to view item details.

RETIRED - TensorFlow Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

TensorFlow and Jupyter notebookRelated Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/818
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

RETIRED - Jupyter Notebook Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include: data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning, and much more.Related Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/820
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

RETIRED - WQ-MAKER with Genemark and BLAT Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

BLAT and Genemark installed in WQ-MAKER image

This image was created by the team at CyVerse and is likely the best MAKER image on Jetstream to use and customize from. This version of MAKER should be multi-node, work queue based, so you should be able to use smaller flavor sizes but more of them. Please refer to the docs linked below.

Docs: https://cyverse-wq-maker-tutorial.readthedocs-hosted.com/en/latest/index.htmlRelated Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/1032
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

Intel Development (CentOS 7) Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

Intel compilers and development environment

*REQUIRES a m1.small or larger VM to launch*

Based on Centos 7 (7.8), Intel(R) Parallel Studio + GUI + iRODs access added

Installation size ~ 18 GBRelated Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/148
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

Genomics Toolkit Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

Genome Analysis Tools

Look here of complete list of tools -> https://iujetstream.atlassian.net/wiki/spaces/JWT/pages/334397443/Genomics+Toolkit+imageRelated Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/701
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

RETIRED - SageMath and JupyterLab Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

Image includes SageMath a free open-source mathematics software system licensed under the GPL; JupyterLab JupyterLab the next-generation web-based user interface for Project Jupyter; R and RstudioRelated Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/836
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

Centos 7 Devel with Anaconda Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

Centos 7 (7.8) Development GUI with Anaconda installed into /opt/anaconda2

Installation size ~ 9.0GB - Requires an m1.small or largerRelated Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/780
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

Centos 8 (8.5) Development GUI Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

Centos 8 (8.5) Development GUI

Installation size ~ 6.6GRelated Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/998
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

Ubuntu 20.04 Devel and Docker Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

Ubuntu 20.04 LTS Development + GUI support + Docker

Based on Ubuntu cloud image for 20.04 LTS with basic dev tools, GUI/Xfce added

Installation size ~ 4.2 GBRelated Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/1023
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

Ubuntu 18.04 Devel and Docker Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

Ubuntu 18.04 LTS Development + GUI support + Docker

Based on Ubuntu cloud image for 18.04 LTS with basic dev tools, GUI/Xfce added

Installation size ~ 4.4 GBRelated Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/717
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

Centos 7 (7.8) Development GUI Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

Centos 7 (7.8) Development GUI

Installation size ~ 4.5GBRelated Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/241
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

Matlab Minimal Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

Matlab R2018a with Update 6 built on Ubuntu 18.04 LTS Development + GUI support + Docker

Based on Ubuntu cloud image for 18.04 LTS with basic dev tools, GUI/Xfce added

Installation size ~ 15 GB -- requires m1.small or larger

Installation folder: /opt/MATLAB/R2018a Products: MATLAB Bioinformatics Toolbox 4.10 Curve Fitting Toolbox 3.5.7 Database Toolbox 8.1 Econometrics Toolbox 5.0 Financial Toolbox 5.11 Global Optimization Toolbox 3.4.4 Image Processing Toolbox 10.2 Neural Network Toolbox 11.1 Optimization Toolbox 8.1 Parallel Computing Toolbox 6.12 Partial Differential Equation Toolbox 3.0 Statistics and Machine Learning Toolbox 11.3 Symbolic Math Toolbox 8.1

SimuLink is NOT installed!Related Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/791
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

RStudio Desktop - Shiny Server Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

RStudio Desktop 1.3.1073 and R 4.0.3 and Shiny Server v1.5.16.958

built on Ubuntu 20.04 LTS Development + GUI support + Docker

Based on Ubuntu cloud image for 20.04 LTS with basic dev tools, GUI/Xfce added

Shiny port is 3838 - /srv/shiny-server is the data directory

/opt/r-packages is R package repository

Installation size ~ 6.4 GB -- imaged on an m1.smallRelated Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/1041
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

Galaxy Standalone Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

Galaxy Server Standalone

Based on Ubuntu cloud image for 18.04 LTS with basic dev tools, GUI/Xfce added

Runs on port 8080 by default -- access as http://your_ip:8080

Installation size ~ 9.8 GB Requires an m1.medium or larger to run.

Information on administering Galaxy may be found here: https://galaxyproject.org/admin/

Galaxy help is here: https://help.galaxyproject.org/

Galaxy dir is /opt/galaxy/galaxyRelated Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/1031
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

Matlab 2021a - Ubuntu 20.04 Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561

Matlab R2021a install - requires an m1.medium or larger

Based on Ubuntu 20.04 LTS Development + GUI support + Docker Installation size ~ 31GBRelated Jetstream resources:

View in source catalog: https://use.jetstream-cloud.org/application/images/1058
Access source catalog: https://use.jetstream-cloud.org/application/images/search
Quick Start Guide: https://wiki.jetstream-cloud.org/Quick+Start+Guide
Introduction Workshop: https://cvw.cac.cornell.edu/jetstream/

boost Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131

boost Version 1.75.0

gaussian Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131

gaussian Version g16c01

hdf5 Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131

hdf5 Version 1.10.7

anaconda Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131

anaconda Version 5.3.1

charm Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131

charm Version 6.8.2

cudnn Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131

cudnn Version 8.0.5.39

eigen Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131

eigen Version 3.3.9

fftw Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131

fftw Version 3.3.9

hdf5 Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131

hdf5 Version 1.12.0

intel Executable Software urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:131

intel Version 2018

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