ACCESS Software Discovery
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| Bioc3.10_docker_singularity Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561 R+ Bioconductor plus docker and singularityRelated Jetstream resources:
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| AUCC-Training Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561 Rstudio enabled image used for AUCC-Training.Related Jetstream resources:
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| katz-lab-spike-sorting-18.04 Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561 Ubuntu 18.04 image for spike sorting updated till Oct 19, 2018. Added: anaconda path to /etc/bash.bashrcRelated Jetstream resources:
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| OSG Cloud Worker Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561 An OSG worker node which users can use their own token and start expressions. Documentation: https://github.com/opensciencegrid/osgvo-cloud-workerRelated Jetstream resources:
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| QIIME2 toolkit Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561 QIIME2 Toolkit- Quantitative Insights into Microbial Ecology is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data.Related Jetstream resources:
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| WarbleR_bioacoustics Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561 Added WarbleR for bioacoustic analysisRelated Jetstream resources:
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| GenApp Ubuntu 16_04 Dev Docker Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561 GenApp development server for Gateway development based upon Ubuntu 16.04 see http://genapp.rocks for more informationRelated Jetstream resources:
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| CAFE Phylogenetics Tutorial Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561 CAFE (Computational Analysis of gene Family Evolution) is an application that analyzes changes in gene family size in a way that accounts for phylogenetic history and provides a statistical foundation for evolutionary inferences. This image includes a tutorial for a full CAFE pipeline including the applications CAFE, BLAST, MCL and r8s.Related Jetstream resources:
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| VJC_R3_4_1_Bioconductor_hdfs v.1.0 Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561 The image has R 3.4 with hdfserver running.Related Jetstream resources:
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| AWS Marketplace Online Service AWS Marketplace is a curated digital catalog that makes it easy for customers to find, buy, consume, and manage third-party software, services, and data that customers need to build solutions and run their businesses. AWS Marketplace includes thousands of software listings from popular categories such as security, networking, storage, machine learning, business intelligence, database, and devOps and simplifies software licensing and procurement with flexible pricing options and multiple deployment methods.
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| CILogon Online Service CILogon is an InCommon service provider, part of the XSEDE architecture, that provides a proxy service from SAML to OIDC and X.509, allowing XSEDE users to log on with their campus identities to access X.509-based services (like GridFTP) and OIDC-based services (like Globus).
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| ASK.CYBERINFRASTRUCTURE Online Service A Q&A platform for researchers, facilitators, sysadmins and others who do research computing
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| Jetstream Cloud Portal and Atmosphere Interface Online Service Cloud-based and on-demand computation, experimentation, and teaching platform.
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| QuantumEspresso Executable Software SEAGrid QuantumEspresso |
| XCRI Cluster Monitoring Toolkit Vendor Software XSEDE XCRI offers a Cluster Monitoring toolkit - compatible with the XCBC or any OpenHPC cluster running Warewulf, that allows sites to install tools that monitor both cluster health and job statistics. The toolkit allows administrators to generate fine-grained reports of usage based on users, projects, and job types, which can be a great aid in keeping track of ROI or justifying future funding.
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| XCRI Virtual Cluster Vendor Software XSEDE Recipe to deploy a Virtual HPC resource on the Jetstream Cooud.
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| Docker Hub Vendor Software Service that makes it easy to create, manage, and deliver docker based container applications.
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| Singularity Container Platform Vendor Software Enabling and securing your performance critical applications from the core, through the cloud, and out to the edge using containers.
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| Google Cloud Platform Vendor Software Google Cloud Platform
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| Google Cloud Platform Marketplace Vendor Software Explore, launch, and manage production-grade solutiosn in just a few clicks
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| AWS Marketplace Vendor Software AWS Marketplace is a curated digital catalog that makes it easy for customers to find, buy, consume, and manage third-party software, services, and data that customers need to build solutions and run their businesses. AWS Marketplace includes thousands of software listings from popular categories such as security, networking, storage, machine learning, business intelligence, database, and devOps and simplifies software licensing and procurement with flexible pricing options and multiple deployment methods.
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| ASK.CYBERINFRASTRUCTURE Vendor Software A Q&A platform for researchers, facilitators, sysadmins and others who do research computing
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| Jetstream Cloud Portal and Atmosphere Interface Vendor Software Cloud-based and on-demand computation, experimentation, and teaching platform.
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| Globus Auth Online Service See Vendor description. Note: Globus Auth uses XUP's https://api.xsede.org/profile/v1/ for accessing XSEDE user profiles
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| Globus Transfer Online Service See Vendor description. Note: Globus Transfer currently relies on the MyProxy OAuth 1.0 interface.
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ACCESS is an advanced computing and data resource supported by the
National Science Foundation
and made possible through these lead institutions and their partners:
Carnegie Mellon University,
University of Colorado Boulder,
University of Illinois at Urbana-Champaign, and
State University of New York at Buffalo .
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