Ubuntu 20.04 Devel and Docker Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Ubuntu 20.04 LTS Development + GUI support + Docker
Based on Ubuntu cloud image for 20.04 LTS with basic dev tools, GUI/Xfce added
Installation size ~ 4.2 GBRelated Jetstream resources:
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Matlab Minimal Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Matlab R2018a with Update 6 built on Ubuntu 18.04 LTS Development + GUI support + Docker
Based on Ubuntu cloud image for 18.04 LTS with basic dev tools, GUI/Xfce added
Installation size ~ 15 GB -- requires m1.small or larger
Installation folder: /opt/MATLAB/R2018a
Products:
MATLAB
Bioinformatics Toolbox 4.10
Curve Fitting Toolbox 3.5.7
Database Toolbox 8.1
Econometrics Toolbox 5.0
Financial Toolbox 5.11
Global Optimization Toolbox 3.4.4
Image Processing Toolbox 10.2
Neural Network Toolbox 11.1
Optimization Toolbox 8.1
Parallel Computing Toolbox 6.12
Partial Differential Equation Toolbox 3.0
Statistics and Machine Learning Toolbox 11.3
Symbolic Math Toolbox 8.1
SimuLink is NOT installed!Related Jetstream resources:
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Galaxy Standalone Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Galaxy Server Standalone
Based on Ubuntu cloud image for 18.04 LTS with basic dev tools, GUI/Xfce added
Runs on port 8080 by default -- access as http://your_ip:8080
Installation size ~ 9.8 GB
Requires an m1.medium or larger to run.
Information on administering Galaxy may be found here:
https://galaxyproject.org/admin/
Galaxy help is here: https://help.galaxyproject.org/
Galaxy dir is /opt/galaxy/galaxyRelated Jetstream resources:
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Pyspark-Ubuntu18.04-instance Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
This image has python3, java8, scala, spark3, hadoop and jupyter notebook pre-installed for I535 AssignmentRelated Jetstream resources:
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Qiime2 toolkit Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
QIIME2 Toolkit- Quantitative Insights into Microbial Ecology is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data.Related Jetstream resources:
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IU-BL-I535-MGMT-DATA Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
This is a VM for IU Bloomington class INFO I535 - Management, Access and Uses of Big Data.Related Jetstream resources:
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| PonyLinux Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561 |
DoaneBIO316_2020 Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Ubuntu 18.04 LTS + Xfce desktop, Anaconda Python 3.7, BiopythonRelated Jetstream resources:
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Frog Call Analysis Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
HALF of workflow for bioacoustic analysis by Random Forest. Complete with minimalist documentationRelated Jetstream resources:
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Frog Call Analysis Secure Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
HALF of workflow for bioacoustic analysis by Random Forest. *****Intermittent image to check for security holes.Related Jetstream resources:
System Message: WARNING/2 (<string>, line 1); backlink
Inline strong start-string without end-string.
System Message: WARNING/2 (<string>, line 1); backlink
Inline strong start-string without end-string.
System Message: WARNING/2 (<string>, line 1); backlink
Inline emphasis start-string without end-string.
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Bioacoustic Data Collection Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Workflow for collecting and visualizing data from a bioacoustic recording device to full visualization of R spectrograms in a Drupal website.Related Jetstream resources:
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bgRAMOSE - Genomics Software Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
This image provides a platform for Brendel Group RAMOSE workflows for computational genomics.
Our RAMOSE philosophy and promise: we take every effort to design our workflows such that a user can generate reproducible, accurate, and meaningful results; our software is open (source), scalable, and easy to use (so that a typical genome laboratory team should be able to run it). And, of course, our software should be ramose (having many branches; see also the ramosa pathway in grass genomics ...) - it is yours to use, modify, improve, enhance, ...Related Jetstream resources:
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REUexercise1 Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
This was an exercise for the REU Jetstream programRelated Jetstream resources:
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openmrs-base Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
The base OpenMRS image for the CICI DynaSWAP projectRelated Jetstream resources:
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Ubuntu 18.04 for SOMOSPIE Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Apache Spark, Java, and various Python and R libraries pre-installed for SOMOSPIE (arXiv:1904.07754 [cs.LG]).Related Jetstream resources:
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Ubuntu 18.04 with Spark Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Ubuntu 18.04 with: Jupyter Notebook installed via ezj; Java 8 and Apache Spark installed in /usr/local; findspark, matplotlib, and pyspark installed with conda.
Built on Ubuntu 18.04 Devel and Docker v1.13 (by jfischer).Related Jetstream resources:
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vjc_ub1804_with_ezj_rstudio Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
adds ezj and rstudio server to ubuntu 18.04 with dockerRelated Jetstream resources:
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WQmaker 2.31.9 with BUSCO Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Updated version of: maker 2.31.9 with CC tools v3.1. This image also contains BUSCO and hhmer to train AugustusRelated Jetstream resources:
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PonyLinux Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
This image comes packed with a little game for learning Unix the fun way! Using ponysay and bash, this game walks you through the basics of command syntax, navigation, and dealing with files.Related Jetstream resources:
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Ubuntu Docker and Gsissh Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
This image has Docker and gsissh installedRelated Jetstream resources:
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Base for Automated Frog ID Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
This contains the base webpage, R packages, sample database on postgresql, and documentation for collecting data from Raspberry Pi recording devicesRelated Jetstream resources:
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Ciliates Popupjb Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Current Iteration of JBrowse image end of april 2019Related Jetstream resources:
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REU Project Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Friday 8 March 2019Related Jetstream resources:
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EPIC Modeling and Simulations Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
Explicit Planetary Isentropic-Coordinate (EPIC) Atmospheric Model
Based on Ubuntu 14.04.3 Development
Patched up to date as of 1/2/17
Base Ubuntu 14.04.3 + Xfce + Xfce-goodies, firefox, icon sets and themes
EPIC 3v9Related Jetstream resources:
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EDGE_v1 Cloud Image urn:ogf:glue2:info.xsede.org:resource:rdr:resource.organizations:561
EDGE bioinformatics websiteRelated Jetstream resources:
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